{
"version": "v2",
"meta": {
"title": "RSV-A phylogeny",
"updated": "2024-07-16",
"build_url": "https://github.com/nextstrain/rsv",
"data_provenance": [
{
"name": "GenBank",
"url": "https://www.ncbi.nlm.nih.gov/genbank/"
}
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"maintainers": [
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"url": "http://nextstrain.org"
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{
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"url": "http://nextstrain.org"
}
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"description": "We gratefully acknowledge the authors, originating and submitting laboratories of the genetic sequences and metadata for sharing their work. Please note that although data generators have generously shared data in an open fashion, that does not mean there should be free license to publish on this data. Data generators should be cited where possible and collaborations should be sought in some circumstances. Please try to avoid scooping someone else's work. Reach out if uncertain.\n\nWe maintain three views of human respiratory syncytial virus evolution for each RSV subtype:\n\nThe first is ['rsv/a/genome'](https://nextstrain.org/staging/rsv/a/genome) and ['rsv/b/genome'](https://nextstrain.org/staging/rsv/b/genome), which show evolution of full genome sequences.\n\nThe second is ['rsv/a/G'](https://nextstrain.org/staging/rsv/a/G) and ['rsv/b/G'](https://nextstrain.org/staging/rsv/b/G), which show evolution of only the G gene, which is highly variable and for which more data points are available than for the full-genome.\n\nThe second is ['rsv/a/F'](https://nextstrain.org/staging/rsv/a/F) and ['rsv/b/F'](https://nextstrain.org/staging/rsv/b/G), which show evolution of only the F gene. The F gene builds currently don't contain any clade annotations.\n\n#### Analysis\n\nOur bioinformatic processing workflow can be found at [github.com/nextstrain/rsv](https://github.com/nextstrain/rsv) and includes:\n\n- sequence alignment by a combination of [Nextclade](https://docs.nextstrain.org/projects/nextclade/en/stable/user/nextclade-cli.html) and [MAFFT](https://mafft.cbrc.jp/alignment/software/).\n- phylogenetic reconstruction using [IQTREE](http://www.iqtree.org/)\n- ancestral state reconstruction and temporal inference using [TreeTime](https://github.com/neherlab/treetime)\n- clade assignment via clade definitions defined here:\n  [RSV-A](https://raw.githubusercontent.com/rsv-lineages/lineage-designation-A/main/.auto-generated/lineage.tsv)\n  [RSV-B](https://raw.githubusercontent.com/rsv-lineages/lineage-designation-A/main/.auto-generated/lineage.tsv)\n  These clade definitions are based on the not-yet-published nomenclature of the RSV Genotyping Consensus Consortium.\n\n#### Underlying data\n\nWe curate sequence data and metadata from the [NCBI Datasets command line tools](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/download-and-install/)\nas starting point for these analyses. See our [ingest configuration file](https://github.com/nextstrain/rsv/blob/master/ingest/config/config.yaml)\nfor the NCBI Taxonomy IDs used to fetch the virus genomes.\nCurated sequences and metadata are available as flat files at:\n\n- [RSV-A sequences](https://data.nextstrain.org/files/workflows/rsv/a/sequences.fasta.xz)\n- [RSV-A metadata](https://data.nextstrain.org/files/workflows/rsv/a/metadata.tsv.gz)\n\n- [RSV-B sequences](https://data.nextstrain.org/files/workflows/rsv/b/sequences.fasta.xz)\n- [RSV-B metadata](https://data.nextstrain.org/files/workflows/rsv/b/metadata.tsv.gz)\n",
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"GTAAACCAAAAAAATGGGGCAAATAAGAATTTGATAAGTACCACTTAAATTTAACTCCTTTGGTTTAAGATGGGCAGCAACTCATTGAGCATGATAAAAGTTAGATTGCAAAATCTGTTTGACAATGATGAAGTAGCATTGTTAAAAATAACATGCTATACTGACAAATTAATACAGTTAACCAATGCTTTGGCTAAGGCAGTTATACATACAATCAAATTGAATGGCATTGTATTTGTGCATGTTATTACAAGTAGTGATATTTGCCCTAATAATAATATTGTAGTGAAATCCAATTTCACAACAATGCCAGTATTACAAAATGGAGGTTATATATGGGAAATGATGGAATTAACACACTGCTCTCAACCTAATGGCCTAATAGATGACAATTGTGAAATTAAATTCTCCAAAAAACTAAGTGATTCAACAATGACCAATTATATGAATCAATTATCTGAATTACTTGGATTTGACCTCAATCCATAAATCATAATAAATATCAACTAGCAAATCAATGTCACTAACACCATTAGTTAATATAAAACTTGACAGAAGATAAAAATGGGGCAAATAAATCAATTCAGCCGACCCAACCATGGACACAACACACAATGATACCACACCACAAAGACTGATGATCACAGACATGAGACCATTATCGCTTGAGACTATAATAACATCTCTAACCAGAGATATCATAACACATAAATTTATATACTTGATAAATCATGAATGCATAGTGAGAAAACTTGATGAAAGACAGGCCACATTTACATTTCTGGTCAACTATGAAATGAAACTATTGCACAAAGTGGGAAGCACTAAATATAAAAAATATACTGAATACAACACAAAATATGGCACTTTCCCTATGCCAATATTTATCAATCATGATGGGTTCTTAGAATGCATTGGCATTAAGCCTACCAAGCACACACCCATAATATACAAGTATGATCTCAATCCATGAATATCAAACCAAGATTCAAACAATCCGAAATAACAACTCTATGCATAATCACACTCCATAGTCCAAATGGAGCCTGGAAATTATAGTTATTTAAAATTAAGGAGAGACATAAGATGAAAGATGGGGCAAATACAAAAATGGCTCTTAGCAAAGTCAAGTTGAATGATACACTCAACAAAGATCAACTTCTATCATCCAGCAAATATACCATCCAACGGAGCACAGGAGACAGCATTGACACTCCTAATTATGATGTGCAGAAACACATTAATAAGTTATGTGGCATGTTATTAATCACAGAAGATGCTAATCATAAATTCACTGGGTTAATAGGTATGTTATATGCTATGTCTAGATTAGGAAGAGAAGACACCATAAAAATACTTAAAGATGCGGGATATCATGTTAAGGCAAATGGAGTGGATGTAACAACACATCGTCAAGACATTAATGGGAAAGAAATGAAATTTGAAGTGTTAACATTAGCAAGCTTAACAACTGAAATTCAAATCAACATTGAGATAGAATCTAGAAAATCCTACAAAAAAATGCTAAAAGAAATGGGAGAGGTGGCTCCAGAATACAGGCATGACTCTCCTGATTGTGGGATGATAATATTATGTATAGCAGCATTAGTAATAACCAAATTAGCAGCAGGAGATAGATCAGGTCTTACAGCTGTGATTAGGAGAGCTAATAATGTCCTAAAAAATGAAATGAAACGTTATAAAGGTTTATTACCCAAGGATATAGCCAACAGCTTCTATGAAGTGTTTGAAAAATATCCTCACTTTATAGATGTTTTTGTTCATTTCGGTATAGCACAATCTTCCACCAGAGGTGGCAGTAGAGTTGAAGGGATTTTTGCAGGATTGTTTATGAATGCCTATGGTGCAGGGCAAGTGATGTTACGGTGGGGGGTCTTAGCAAAATCAGTTAAAAACATTATGTTAGGACACGCTAGTGTACAAGCAGAAATGGAACAAGTTGTGGAGGTGTATGAGTATGCTCAGAAATTGGGTGGAGAAGCAGGATTCTACCATATATTGAACAACCCAAAAGCATCACTATTATCTTTGACTCAATTTCCTCACTTCTCTAGTGTAGTATTGGGCAATGCTGCTGGCCTAGGCATAATGGGAGAATACAGAGGTACACCAAGGAATCAAGATTTATATGATGCTGCAAAAGTATATGCTGAACAACTCAAAGAAAATGGTGTGATTAACTACAGTGTATTAGATTTGACAGCAGAAGAACTAGAGGCTATCAAACATCAGCTTAATCCAAAAGATAATGATGTAGAGCTTTGAGTTAATAAAAAGGTGGGGCAAATAAATCATCATGGAAAAGTTTGCTCCTGAATTCCATGGAGAAGATGCAAACAACAGAGCCACCAAATTCCTAGAATCAATAAAAGGCAAATTCACATCACCCAAAGATCCCAAGAAAAAAGATAGTATCATATCTGTCAACTCAATAGATATAGAAGTAACCAAAGAAAGCCTTATAACATCAAATTCAACCATTATAAACCCAATAAATGAGACAGATGATACTGTAGGGAACAAGCCCAATTATCAAAGAAAGCCTCTAGTAAGTTTCAAAGAAGACCCTACGCCAAGTGATAATCCTTTTTCAAAACTATACAAAGAAACCATAGAAACATTTGATAACAATGAAGAAGAATCTAGCTATTCATATGAAGAAATAAATGATCAAACAAACGATAATATAACAGCAAGATTAGATAGGATTGATGAGAAATTAAGTGAAATACTAGGAATGCTTCACACATTAGTAGTAGCGAGTGCAGGACCCACATCTGCTCGGGATGGTATAAGAGATGCCATGGTTGGTTTAAGAGAAGAAATGATAGAAAAAATCAGAACTGAAGCATTAATGACCAATGACAGACTAGAAGCTATGGCAAGACTCAGGAATGAAGAAAGTGAAAAGATGGCAAAAGACACATCAGATGAAGTGTCTCTCAATCCAACATCAGAGAAACTGAACAACCTGTTGGAAGGGAATGATAGTGACAATGATCTATCACTTGAAGATTTCTGATTAGCTACCAAACTGTACATCAAAACACAACACCAATAGAAAACCAACAAACAAACCAACTCACCTATCCAACCAAACATCCATCTGCTGATTAGCCAACCAGCCAAAAAACAACCAGCTAATCCAAAACTAGCTACTCGAAAAAAATCGATACTATAGTTACAAAAAAAGATGGGGCAAATATGGAAACATACGTGAATAAACTTCACGAGGGCTCCACATACACAGCTGCTGTTCAATACAATGTCCTAGAAAAAGACGACGATCCTGCATCACTTACAATATGGGTGCCCATGTTCCAATCATCCATGCCAGCAGATCTACTCATAAAAGAACTAGCCAATGTCAATATACTAGTGAAACAAATATCCACACCCAAGGGACCCTCATTAAGAGTCATGATAAACTCAAGAAGTGCAGTGCTAGCACAAATGCCCAGTAAATTTACCATATGTGCCAATGTGTCCTTGGATGAAAGAAGCAAGCTGGCATATGATGTAACCACACCCTGTGAAATTAAAGCATGCAGTCTAACATGCCTAAAATCAAAAAATATGTTAACTACAGTTAAAGATCTCACCATGAAAACACTCAACCCAACACATGACATCATTGCTTTATGTGAATTTGAAAATATAGTAACATCAAAAAAAGTCATAATACCAACATACCTAAGATCTATCAGCGTCAGAAATAAAGATCTGAACACACTTGAAAATATAACAACCACTGAATTCAAAAATGCCATTACAAATGCAAAAATTATCCCTTACTCAGGATTACTGTTAGTCATCACAGTGACTGACAACAAAGGAGCATTCAAATACATAAAGCCACAAAGTCAATTCATAGTAGATCTTGGAGCTTACCTAGAAAAAGAAAGCATATATTATGTTACAACAAATTGGAAGCACACAGCTACACGATTTGCAATCAAACCCATGGAAGATTAACCTTTTTCCTCTACATCAATGAGTAGATTCATACAAACTTCCCAACTACATTCTTCACTTCACAATCATAATCACCAACCCTCTGTGGTTCAATCAATCAAACAAAACTCATCAGGAGTTCCAGATCATCCCAAGTCATTGTTCATCAGATCCAGTACTCAAATAAGTTAATAAAAAATCCACATGGGGCAAATAATCATTTAGGGAAATCCAACTAATCACAACATCTGTCAACATAGACAAGTCAGCACGCTAGATAAAATCAACCAATGGAAAATACATCCATAACTATAGAATTCTCAAGCAAATTCTGGCCTTACTTTACACTAATACACATGATAACAACAATAATCTCTTTGATAATAATAATCTCCATCATGATTGCAATACTAAACAAACTCTGCGAATATAATGTATTCCATAACAAAACCTTTGAGCTACCACGAGCTCGAGTCAATACATAGCATTCACCAATCTGATAGCTCAAAACAGTAACCTTGTATTTGTAAATGAACTACCCTCACTTCTTCACAAAACCACATCAACATCTCACCATGCAAGCCATCATCTATACCATAAAGTAGTTAATTAAAAAATAGTCATAACAATGAACTAGGATATTAAGACCAAAAACAACGCTGGGGCAAATGCAAACATGTCCAAAACCAAGGACCAACGCACCGCCAAGACACTAGAAAGGACCTGGGACACTCTCAATCATCTATTATTCATATCATCGTGCTTATACAAGTTAAATCTTAAATCTATAGCACAAATCACATTATCTATTTTGGCAATGATAATCTCAACCTCACTTATAATTGCAGCCATCATATTCATAGCCTCGGCAAACCACAAAGTCACACCAACAACTGCAATCATACAAGATGCAACGAACCAGATCAAGAACACAACCCCAACACACCTCACCCAGAATCCTCAGCTTGGAATCAGCCTCTCCAATCTGTCCGGAACTACATCACAATCCACCACCATACTAGCTTCAACAACACCAAGTGCTGAGTCAACCCCACAATCCACAACAGTCAAGATCATAAACACAACAACAACCCAAATATTACCTAGCAAACCCACCACAAAACAACGCCAAAATAAACCACAAAACAAACCCAACAATGATTTTCACTTTGAAGTGTTCAATTTTGTACCCTGCAGCATATGCAGCAACAATCCAACCTGCTGGGCCATCTGCAAGAGAATACCAAACAAAAAACCTGGAAAGAAAACCACCACCAAGCCCACAAAAAAACCAACCCTCAAGACAACCAAAAAAGATCCCAAACCTCAAACCACAAAACCAAAGGGAGTACTCACTACCAAGCCTACAGGAAAGCCAACCATCAACACCACTAAAACCAACAGCAGAACTACACTGCTCACCTCCAACACCAAAGGAAATCCAGAACACACAAGTCAAAAGGAAACCATCCACTCAACCACCTCCGAAGGCTATCCAAGCCCATCACAAGTCTATACAACATCCGATCAAGAGGAAACCCTCCACTCAACCACCTCCGAAGGCTATCCAAGCCCATCACAAGTCTATACAACATCCGAGTACCTATCACAATCTCTATCTTCATCCAACACAACAAAATGATAGTCATTAAAAAGCGTATTGTTGCAAAAGGCCATGACCAAATCAAACAGAATCAAAATCAACTTTGGGGCAAATAACAATGGAGTTGCCAATCCTCAAAACAAATGCTATTACCACAATCCTTGCTGCAGTCACACTCTGTTTTGCTTCCAGTCAAAACATCACTGAAGAATTTTATCAATCAACATGCAGTGCAGTTAGCAAAGGCTATCTTAGTGCTCTAAGAACTGGTTGGTATACTAGTGTTATAACTATAGAATTAAGTAATATCAAGGAAAATAAGTGTAATGGTACAGACGCTAAGGTAAAATTAATAAAACAAGAATTAGATAAATATAAAAATGCTGTAACAGAATTGCAGTTGCTCATGCAAAGCACACCAGCAGCCAACAGTCGAGCCAGAAGAGAACTACCAAGATTTATGAATTATACACTCAACAACACCAAAAACACCAATGTAACATTAAGTAAGAAAAGGAAAAGAAGATTTCTTGGATTTTTGTTAGGTGTTGGATCTGCAATCGCCAGTGGCATTGCCGTATCCAAGGTCCTGCACCTAGAAGGGGAAGTGAACAAAATCAAAAGTGCTCTACTATCCACAAACAAGGCTGTAGTCAGCTTATCTAATGGAGTCAGTGTCTTAACCAGCAAGGTGTTAGACCTCAAAAACTATATAGATAAACAGTTGTTACCTATTGTTAACAAGCAAAGTTGCAGCATATCAAACATTGAAACTGTGATAGAGTTCCAACAAAAGAACAACAGACTACTAGAGATTACCAGAGAATTTAGTGTTAATGCAGGTGTAACTACACCTGTAAGCACTTATATGTTAACTAATAGTGAGTTATTATCATTAATCAATGATATGCCTATAACAAATGATCAGAAAAAGTTAATGTCCAGCAATGTTCAAATAGTTAGACAGCAAAGTTACTCTATCATGTCAATAATAAAAGAGGAAGTCTTAGCATATGTAGTACAATTACCACTATATGGTGTAATAGATACTCCTTGTTGGAAACTACACACATCCCCTCTATGTACAACTAACACAAAGGAAGGATCCAACATCTGCTTAACAAGAACCGACAGAGGATGGTACTGTGACAATGCAGGATCAGTATCCTTTTTCCCACAAGCTGAAACATGTAAAGTTCAATCGAATCGGGTGTTTTGTGACACAATGAACAGTTTAACATTACCAAGTGAGGTAAATCTCTGCAACATTGACATATTCAACCCCAAATATGATTGCAAAATTATGACTTCAAAAACAGATGTAAGCAGCTCCGTTATCACATCTCTAGGAGCCATTGTGTCATGCTATGGCAAAACCAAATGTACAGCATCCAATAAAAATCGTGGGATCATAAAGACATTCTCTAATGGGTGTGATTATGTATCAAATAAGGGGGTGGATACTGTGTCTGTAGGTAATACATTATATTATGTAAATAAGCAAGAAGGCAAAAGTCTCTATGTAAAAGGTGAACCAATAATAAATTTCTATGATCCATTAGTGTTCCCCTCTGATGAATTTGATGCATCAATATCTCAAGTCAATGAGAAAATTAATCAGAGTCTAGCATTTATCCGTAAATCAGATGAATTATTACATAATGTAAATGCTGGTAAATCCACCACAAATATCATGATAACTACCATAATTATAGTAATTATAGTAATATTGTTAGCATTAATTGCAGTTGGACTGCTTCTATACTGCAAGGCCAGAAGCACACCAGTCACATTAAGTAAGGATCAACTGAGTGGTATAAATAACATTGCATTTAGTAACTGAATAAAAATAGCACCTAATCATATTCTTACAATGGTTCGCTATTTGACCATAGATAACCCATCTATAATTAGATTATCCTAAAATTTGAACTTCATCACAACTTTCATTTATAAACCATCTTACTTACACTTTTTAAGTAGATTCCTATTTTATAGTTATATAAAACAATTGAATACCAAATTAACTTACTATTTGTAAAAATGAGAACTGGGGCAAATATGTCACGAAGGAATCCTTGCAAATTCGAAATTCGAGGTCATTGCTTGAATGGTAAAAGGTGTCATTTTAGTCATAATTATTTTGAATGGCCACCCCATGCACTGCTTGTAAGACAAAACTTTATGTTAAACAGAATACTTAAGTCTATGGATAAAAGCATAGATACATTGTCAGAAATAAGTGGAGCTGCAGAGTTGGACAGAACAGAAGAGTATGCCCTCGGTGTAGTTGGAGTGCTAGAGAGTTATATAGGATCAATAAATAATATAACTAAACAATCAGCATGTGTTGCCATGAGCAAACTCCTTACTGAACTCAACAGCGATGACATCAAAAAACTAAGGGACAATGAAGAGCCAAACTCACCCAAAGTAAGAGTGTACAATACTGTCATATCATATATTGAAAGCAACAGGAAGAACAATAAACAAACTATCCATTTGTTAAAAAGATTGCCAGCAGACGTATTGAAGAAAACCATCAAAAACACATTGGATATCCACAAGAGCATAACCATCAATAACTCAAAAGAATCAACTGTTAGTGATACGAACGACCATGCCAAAAATAATGATACTACCTGACAAATATCCTTGTAGTATAAATTCCATACTAATAACAAGTAATTATAGAGTCACTATGTATAATCAAAAAAACACACTATATATCAATCAAAACAACCAAAATAGCCATATATACCCACCAGATCAACCATTCAATGAAATCCATTGGACCTCTCAAGACTTGATTGATGCAACTCAAAATTTTCTACAACATCTAGGTATTACTGATGATATATACACAATATATATATTAGTGTCATAATACTCAATCCTAATACTTACCACATCATCAAATTATTAACTCAAACAATTCAAGCTATGGGACAAAATGGATCCCATTATTAGTGGAAATTCTGCTAATGTTTATCTAACTGATAGTTATTTAAAAGGTGTTATTTCTTTCTCAGAATGTAACGCTTTAGGAAGTTACATATTCAATGGTCCTTATCTCAAAAATGATTATACCAACTTAATTAGTAGACAAAATCCATTAATAGAACACATAAATCTAAAGAAACTAAATATAACACAGTCCTTAATATCTAAGTATCATAAAGGTGAAATAAAAATAGAAGAACCTACTTACTTTCAGTCATTACTTATGACATACAAGAGTATGACCTCTTCAGAACAGACTACTACTACTAATTTACTTAAAAAGATAATAAGAAGAGCTATAGAAATCAGTGATGTCAAAGTCTATGCTATATTGAATAAACTGGGGCTCAAAGAAAAAGACAAGATTAAATCCAATAATGGACAAGATGAAGACAACTCAGTCATTACTACCATAATCAAAGATGATATACTTCTAGCTGTCAAGGATAATCAATCTCATCCTAAAGCAGACAAAAATCAATCCACGAAACAAAAAGATACAATCAAAACAACACTTTTGAAGAAATTAATGTGTTCAATGCAACATCCTCCATCATGGTTAATACATTGGTTTAATTTATACACAAAATTAAACAGCATATTAACACAATATCGATCTAGTGAGGTAAAAAACCATGGTTTTATATTGATAGATAATCATACTCTTAGTGGATTCCAATTTATTTTGAATCAATATGGTTGTATAGTTTATCATAGGGAACTCAAAAGAATTACTGTGACTACTTATAATCAATTCTTGACATGGAAAGATATTAGCCTTAGTAGATTAAATGTTTGTTTGATTACATGGATTAGTAACTGTTTGAACACATTAAACAAGAGCTTAGGCTTAAGATGTGGATTCAATAATGTTATCTTGACACAATTATTCCTTTATGGAGATTGTATACTAAAACTATTCCACAATGAGGGGTTCTACATAATAAAAGAGGTAGAGGGATTTATTATGTCTCTAATTTTAAATATAACAGAAGAAGATCAATTCAGAAAACGGTTTTATAATAGTATGCTCAACAACATCACAGATGCCGCCAACAAAGCTCAAAAAAATCTGCTATCAAGAGTATGTCATACATTATTAGATAAGACAATATCAGATAATATAATAAATGGCAGATGGATAATTCTATTGAGTAAGTTCCTAAAATTAATTAAGCTTGCAGGTGACAATAACCTCAACAATCTGAGTGAATTATATTTTTTGTTCAGAATATTTGGACACCCAATGGTAGATGAAAGACAAGCCATGGATGCTGTTAAAGTTAATTGCAACGAGACCAAATTTTACTTGTTAAGTAGTTTGAGTATGTTAAGAGGAGCTTTTATATATAGAATTATAAAAGGGTTTGTAAATAATTACAACAGATGGCCTACTTTAAGAAATGCCATTGTCTTACCCTTAAGATGGTTAACTTACTATAAACTAAACACTTATCCTTCCTTGTTGGAACTTACAGAAAGAGATTTGATTGTTCTATCAGGACTACGTTTCTATCGAGAGTTTCGGTTGCCTAAAAAAGTGGATCTTGAAATGATCATAAATGATAAGGCTATATCACCTCCTAAAAATTTAATATGGACTAGTTTCCCTAGAAATTATATGCCATCACACATACAAAATTATATAGAACATGAAAAATTAAAATTCTCTGATAGTGATAAATCAAGAAGAGTATTAGAGTATTATTTAAGAGATAACAAATTCAATGAATGTGATTTATACAACTGTGTAGTTAATCAAAGTTATCTTAACAACCCGAATCATGTGGTATCATTGACAGGCAAAGAAAGAGAACTCAGTGTAGGTAGAATGTTTGCAATGCAACCAGGAATGTTCAGACAAGTTCAAATATTAGCAGAGAAAATGATAGCAGAAAACATATTACAATTTTTCCCTGAAAGTCTTACAAGATATGGTGATCTAGAACTACAGAAAATATTAGAATTGAAAGCAGGAATAAGTAACAAATCAAATCGTTACAATGATAATTACAACAATTACATTAGTAAGTGCTCTATCATCACAGATCTCAGCAAATTCAATCAAGCATTTCGATATGAAACATCATGTATTTGTAGTGATGTACTGGATGAACTGCATGGTGTACAATCTCTATTTTCCTGGTTACATTTAACTATTCCTCATGTCACAATAATATGCACATATAGGCATGCACCCCCCTATATAAAGGATCATATTGTAGATCTTAACAATGTAGATGAGCAAAGTGGACTATATAGATATCATATGGGTGGTATCGAAGGGTGGTGTCAAAAACTATGGACCATAGAAGCTATATCACTATTAGATCTAATATCTCTCAAAGGGAAATTCTCAATTACTGCTTTAATTAATGGTGACAATCAATCAATAGATATAAGTAAACCAGTCAGACTCATGGAAGGTCAAACTCATGCTCAAGCAGATTATTTGCTAGCATTAAATAGTCTCAAATTACTGTATAAAGAGTATGCAGGAATAGGCCACAAATTAAAAGGAACTGAGACTTATATATCGAGGGATATGCAATTTATGAGTAAAACGATCCAACATAACGGTGTATATTACCCAGCTAGTATAAAGAAAGTCCTAAGAGTGGGACCGTGGATAAACACTATACTTGATGACTTCAAAGTGAGTCTAGAATCTATAGGTAGTTTGACACAAGAATTAGAATATAGAGGTGAAAGTCTATTATGCAGTTTAATATTTAGAAATGTATGGTTATATAATCAAATTGCATTACAACTTAAAAATCATGCATTATGTAACAACAAATTATATTTGGATATATTAAAAGTTCTAAAACACTTAAAAACCTTTTTTAATCTTGATAACATTGATACAGCATTAACATTGTATATGAATTTGCCCATGTTATTTGGTGGTGGTGATCCCAACTTGTTATATCGAAGTTTCTATAGAAGAACTCCTGATTTCCTCACAGAGGCTATAGTTCACTCTGTGTTCATACTTAGTTATTATACAAACCATGATTTAAAAGATAAACTTCAAGATCTGTCAGATGATAGATTGAATAAGTTCTTAACATGCATAATCACGTTTGACAAAAACCCCAATGCTGAATTCGTTACATTGATGAGAGATCCTCAAGCTTTAGGATCTGAGAGGCAAGCTAAAATTACTAGCGAAATCAATAGACTGGCAGTTACCGAGGTTTTGAGCACAGCTCCAAACAAAATATTTTCCAAAAGTGCACAACACTATACCACTACAGAGATAGATCTTAATGATATTATGCAAAATATAGAACCTACATATCCTCACGGGCTAAGAGTTGTTTATGAAAGTTTACCCTTTTATAAAGCAGAGAAAATAGTAAATCTTATATCCGGTACAAAATCTATAACTAACATACTGGAAAAGACTTCTGCCATAGACTTAACAGATATTGATAGAGCCACTGAGATGATGAGGAAAAACATAACTTTGCTTATAAGGATATTACCATTAGATTGTAACAGAGATAAAAGAGAAATATTGAGTATGGAAAACCTAAGTATTACTGAATTAAGCAAATACGTTAGAGAAAGATCCTGGTCTTTATCCAATATAGTTGGTGTTACATCACCCAGTATCATGTATACAATGGACATAAAATATACAACAAGCACTATAGCTAGTGGCATAATCATAGAGAAATATAATGTCAACAGTTTAACACGTGGTGAGAGAGGACCCACTAAACCATGGGTTGGTTCATCTACACAAGAGAAAAAGACAATGCCAGTTTATAATAGACAAGTTTTAACCAAAAAACAGAGAGATCAAATAGATCTATTAGCAAAATTGGATTGGGTGTATGCATCTATAGATAACAAGGATGAATTTATGGAGGAACTTAGCATAGGAACTCTTGGGTTAACATATGAGAAGGCCAAAAAATTATTCCCACAATATTTAAGTGTTAACTATTTGCATCGTCTTACAGTCAGTAGTAGACCATGTGAATTCCCTGCATCTATACCAGCTTATAGAACTACAAATTATCACTTTGATACTAGCCCTATTAATCGCATATTAACAGAAAAGTATGGTGATGAAGATATTGATATAGTATTCCAAAACTGTATAAGCTTTGGCCTCAGCTTAATGTCTGTAGTAGAACAATTTACTAATGTATGTCCTAACAGAATTATTCTCATACCCAAGCTTAATGAGATACATTTGATGAAACCTCCCATATTCACAGGTGATGTTGATATTCACAAGTTAAAACTAGTGATACAAAAACAACATATGTTTTTACCAGACAAAATAAGTTTGACTCAATATGTGGAATTATTCTTAAGTAATAAAACACTCAAATCTGGATCTAATGTTAATTCTAATTTAATATTGGCGCATAAGATATCTGACTATTTTCATAATACTTACATTTTAAGTACTAATTTAGCTGGACATTGGATTCTTATTATACAACTTATGAAAGATTCTAAGGGTATTTTTGAAAAAGATTGGGGAGAGGGATATATAACTGATCATATGTTCATTAATTTGAAAGTTTTCTTCAATGCTTATAAGACATATCTCTTGTGTTTTCACAAAGGTTACGGCAGAGCAAAGCTGGAGTGTGATATGAATACTTCAGATCTCCTATGTGTATTGGAATTAATAGACAGTAGTTATTGGAAGTCTATGTCTAAGGTGTTTTTAGAACAAAAAGTTATCAAATACATTCTTAGCCAAGATGCAAGTTTACATAGAGTAAAAGGATGTCATAGCTTCAAACTATGGTTTCTTAAACGTCTTAATGTAGCAGAATTCACAGTTTGCCCTTGGGTTGTTAACATAGATTATCATCCAACACATATGAAAGCAATATTAACTTATATTGATCTTGTTAGAATGGGATTGATAAATATAGATAGAATATACATTAAAAATAAACACAAGTTCAATGATGAGTTTTATACTTCTAATCTGTTTTACATTAATTATAACTTCTCAGATAATACTCATCTATTAACTAAACATATAAGGATTGCTAATTCCGAATTAGAAAGTAATTACAACAAATTATATCATCCCACACCAGAAACCCTAGAAAATATACTAACCAATCCGGTTAAAAATAATGAAAAAAAGACACTGAGTGGCTATTGTATAGGTAAAAATGTTGACTCAATAATGTTACCATCGTTATCTAATAAGAAGCTTATTAAATCGTCTACTATGATTAGAACCAATTACAGCAGACAAGATTTGTATAATTTATTTCCTACGGTTGTGATTGATAAAATTATAGATCATTCAGGTAATACAGCCAAATCTAACCAACTTTACACTACTACTTCTCATCAAATATCCTTAGTGCACAATAGCACATCACTTTATTGCATGCTTCCTTGGCATCATATTAATAGATTCAATTTTGTATTTAGTTCTACAGGTTGTAAAATTAGTATAGAGTATATTTTAAAAGATCTTAAAATTAAGGATCCTAATTGTATAGCATTCATAGGTGAAGGAGCAGGGAATTTATTATTGCGTACAGTAGTGGAACTTCATCCTGATATAAGATATATTTACAGAAGTCTGAAAGATTGCAATGATCATAGTTTACCAATTGAGTTTTTAAGGCTGTACAATGGACATATCAACATTGATTATGGTGAAAATTTGACCATTCCTGCTACAGATGCAACCAACAACATTCATTGGTCTTATTTACATATAAAGTTTGCTGAACCTATCAGTCTTTTTGTCTGTGATGCTGAATTGCCTGTAACAGTCAACTGGAGTAAGATTATAATAGAGTGGAGCAAGCATGTAAGAAAATGCAAATACTGCTCTTCAGTTAATAAATGTACATTAATAGTAAAATATCATGCTCAAGATGATATCGATTTCAAATTAGACAACATAACTATATTAAAAACTTATGTATGCTTAGGTAGTAAGTTAAAGGGATCTGAAGTTTACTTAGTCCTTACAATAGGTCCTGCAAATGTGTTCCCAGTATTTAATGTAGTACAAAATGCTAAATTGATACTATCAAGAACCAAAAATTTCATCATGCCTAAAAAAGCTGATAAAGAGTCTATTGATGCAAATATTAAGAGTTTGATACCCTTTCTTTGTTACCCCATAACAAAAAAAGGAATTAATACTGCATTGTCTAAATTAAAGAGTGTTGTTAGTGGAGATATACTATCATATTCTATAGCTGGACGTAATGAAGTTTTCAGCAATAAACTTATAAATCATAAGCATATGAACATCTTAAAGTGGTTCAATCATGTTTTGAATTTCAGATCAACAGAATTAAACTATAATCATTTATATATGGTAGAATCTACTTATCCTCATCTAAGTGAATTGTTAAACAGCTTGACAACCAATGAACTTAAAAAACTGATTAAAATCACAGGTAGTTTGTTATACAACTTTTATAATGAATAATGAGCAAAAATCTTATAACAAAAATAGCTACACACTAACATTGTATTCAATTATAGTTATTTAAAATTAATAATTATATAATTTTTAATAACTTCTAGTGAACTAATCCTAAAATTATCATTTTGATCTAGGAAGAATAAGTTTAAATCCAAATCTAATTGGTTTATATGTATATTGACTAAATTACGAGATATTA",
"F": "MELPILKTNAITTILAAVTLCFASSQNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQSTPAANSRARRELPRFMNYTLNNTKNTNVTLSKKRKRRFLGFLLGVGSAIASGIAVSKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSSNVQIVRQQSYSIMSIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCNIDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELLHNVNAGKSTTNIMITTIIIVIIVILLALIAVGLLLYCKARSTPVTLSKDQLSGINNIAFSN*",
"G": "MSKTKDQRTAKTLERTWDTLNHLLFISSCLYKLNLKSIAQITLSILAMIISTSLIIAAIIFIASANHKVTPTTAIIQDATNQIKNTTPTHLTQNPQLGISLSNLSGTTSQSTTILASTTPSAESTPQSTTVKIINTTTTQILPSKPTTKQRQNKPQNKPNNDFHFEVFNFVPCSICSNNPTCWAICKRIPNKKPGKKTTTKPTKKPTLKTTKKDPKPQTTKPKGVLTTKPTGKPTINTTKTNSRTTLLTSNTKGNPEHTSQKETIHSTTSEGYPSPSQVYTTSDQEETLHSTTSEGYPSPSQVYTTSEYLSQSLSSSNTTK*",
"L": "MDPIISGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDYTNLISRQNPLIEHINLKKLNITQSLISKYHKGEIKIEEPTYFQSLLMTYKSMTSSEQTTTTNLLKKIIRRAIEISDVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILLAVKDNQSHPKADKNQSTKQKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNSILTQYRSSEVKNHGFILIDNHTLSGFQFILNQYGCIVYHRELKRITVTTYNQFLTWKDISLSRLNVCLITWISNCLNTLNKSLGLRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIMSLILNITEEDQFRKRFYNSMLNNITDAANKAQKNLLSRVCHTLLDKTISDNIINGRWIILLSKFLKLIKLAGDNNLNNLSELYFLFRIFGHPMVDERQAMDAVKVNCNETKFYLLSSLSMLRGAFIYRIIKGFVNNYNRWPTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLSGLRFYREFRLPKKVDLEMIINDKAISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSDSDKSRRVLEYYLRDNKFNECDLYNCVVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGMFRQVQILAEKMIAENILQFFPESLTRYGDLELQKILELKAGISNKSNRYNDNYNNYISKCSIITDLSKFNQAFRYETSCICSDVLDELHGVQSLFSWLHLTIPHVTIICTYRHAPPYIKDHIVDLNNVDEQSGLYRYHMGGIEGWCQKLWTIEAISLLDLISLKGKFSITALINGDNQSIDISKPVRLMEGQTHAQADYLLALNSLKLLYKEYAGIGHKLKGTETYISRDMQFMSKTIQHNGVYYPASIKKVLRVGPWINTILDDFKVSLESIGSLTQELEYRGESLLCSLIFRNVWLYNQIALQLKNHALCNNKLYLDILKVLKHLKTFFNLDNIDTALTLYMNLPMLFGGGDPNLLYRSFYRRTPDFLTEAIVHSVFILSYYTNHDLKDKLQDLSDDRLNKFLTCIITFDKNPNAEFVTLMRDPQALGSERQAKITSEINRLAVTEVLSTAPNKIFSKSAQHYTTTEIDLNDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNLISGTKSITNILEKTSAIDLTDIDRATEMMRKNITLLIRILPLDCNRDKREILSMENLSITELSKYVRERSWSLSNIVGVTSPSIMYTMDIKYTTSTIASGIIIEKYNVNSLTRGERGPTKPWVGSSTQEKKTMPVYNRQVLTKKQRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLTYEKAKKLFPQYLSVNYLHRLTVSSRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDEDIDIVFQNCISFGLSLMSVVEQFTNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKLVIQKQHMFLPDKISLTQYVELFLSNKTLKSGSNVNSNLILAHKISDYFHNTYILSTNLAGHWILIIQLMKDSKGIFEKDWGEGYITDHMFINLKVFFNAYKTYLLCFHKGYGRAKLECDMNTSDLLCVLELIDSSYWKSMSKVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEFTVCPWVVNIDYHPTHMKAILTYIDLVRMGLINIDRIYIKNKHKFNDEFYTSNLFYINYNFSDNTHLLTKHIRIANSELESNYNKLYHPTPETLENILTNPVKNNEKKTLSGYCIGKNVDSIMLPSLSNKKLIKSSTMIRTNYSRQDLYNLFPTVVIDKIIDHSGNTAKSNQLYTTTSHQISLVHNSTSLYCMLPWHHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLLLRTVVELHPDIRYIYRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWSYLHIKFAEPISLFVCDAELPVTVNWSKIIIEWSKHVRKCKYCSSVNKCTLIVKYHAQDDIDFKLDNITILKTYVCLGSKLKGSEVYLVLTIGPANVFPVFNVVQNAKLILSRTKNFIMPKKADKESIDANIKSLIPFLCYPITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLINHKHMNILKWFNHVLNFRSTELNYNHLYMVESTYPHLSELLNSLTTNELKKLIKITGSLLYNFYNE*",
"M": "METYVNKLHEGSTYTAAVQYNVLEKDDDPASLTIWVPMFQSSMPADLLIKELANVNILVKQISTPKGPSLRVMINSRSAVLAQMPSKFTICANVSLDERSKLAYDVTTPCEIKACSLTCLKSKNMLTTVKDLTMKTLNPTHDIIALCEFENIVTSKKVIIPTYLRSISVRNKDLNTLENITTTEFKNAITNAKIIPYSGLLLVITVTDNKGAFKYIKPQSQFIVDLGAYLEKESIYYVTTNWKHTATRFAIKPMED*",
"M2-1": "MSRRNPCKFEIRGHCLNGKRCHFSHNYFEWPPHALLVRQNFMLNRILKSMDKSIDTLSEISGAAELDRTEEYALGVVGVLESYIGSINNITKQSACVAMSKLLTELNSDDIKKLRDNEEPNSPKVRVYNTVISYIESNRKNNKQTIHLLKRLPADVLKKTIKNTLDIHKSITINNSKESTVSDTNDHAKNNDTT*",
"M2-2": "TTMPKIMILPDKYPCSINSILITSNYRVTMYNQKNTLYINQNNQNSHIYPPDQPFNEIHWTSQDLIDATQNFLQHLGITDDIYTIYILVS*",
"N": "MALSKVKLNDTLNKDQLLSSSKYTIQRSTGDSIDTPNYDVQKHINKLCGMLLITEDANHKFTGLIGMLYAMSRLGREDTIKILKDAGYHVKANGVDVTTHRQDINGKEMKFEVLTLASLTTEIQINIEIESRKSYKKMLKEMGEVAPEYRHDSPDCGMIILCIAALVITKLAAGDRSGLTAVIRRANNVLKNEMKRYKGLLPKDIANSFYEVFEKYPHFIDVFVHFGIAQSSTRGGSRVEGIFAGLFMNAYGAGQVMLRWGVLAKSVKNIMLGHASVQAEMEQVVEVYEYAQKLGGEAGFYHILNNPKASLLSLTQFPHFSSVVLGNAAGLGIMGEYRGTPRNQDLYDAAKVYAEQLKENGVINYSVLDLTAEELEAIKHQLNPKDNDVEL*",
"NS1": "MGSNSLSMIKVRLQNLFDNDEVALLKITCYTDKLIQLTNALAKAVIHTIKLNGIVFVHVITSSDICPNNNIVVKSNFTTMPVLQNGGYIWEMMELTHCSQPNGLIDDNCEIKFSKKLSDSTMTNYMNQLSELLGFDLNP*",
"NS2": "MDTTHNDTTPQRLMITDMRPLSLETIITSLTRDIITHKFIYLINHECIVRKLDERQATFTFLVNYEMKLLHKVGSTKYKKYTEYNTKYGTFPMPIFINHDGFLECIGIKPTKHTPIIYKYDLNP*",
"P": "MEKFAPEFHGEDANNRATKFLESIKGKFTSPKDPKKKDSIISVNSIDIEVTKESLITSNSTIINPINETDDTVGNKPNYQRKPLVSFKEDPTPSDNPFSKLYKETIETFDNNEEESSYSYEEINDQTNDNITARLDRIDEKLSEILGMLHTLVVASAGPTSARDGIRDAMVGLREEMIEKIRTEALMTNDRLEAMARLRNEESEKMAKDTSDEVSLNPTSEKLNNLLEGNDSDNDLSLEDF*",
"SH": "MENTSITIEFSSKFWPYFTLIHMITTIISLIIIISIMIAILNKLCEYNVFHNKTFELPRARVNT*"
}
}